Publications

2010

Burgaud G, Arzur D, Durand L, Cambon-Bonavita MA, Barbier G. Marine culturable yeasts in deep-sea hydrothermal vents: species richness and association with fauna. FEMS Microbiol Ecol. 2010 Jul 1;73(1):121-33

Cleusix V, Lacroix C, Dasen G, Leo M, Le Blay G. Comparative study of a new quantitative real-time PCR targeting the xylulose-5-phosphate/fructose-6-phosphate phosphoketolase bifidobacterial gene (xfp) in faecal samples with two fluorescence in situ hybridization methods.J Appl Microbiol. 2010 Jan;108(1):181-93

Kheadr E, Zihler A, Dabour N, Lacroix C, Le Blay G, Fliss I. Study of the physicochemical and biological stability of pediocin PA-1 in the upper gastrointestinal tract conditions using a dynamic in vitro model. J Appl Microbiol. 2010 Jul;109(1):54-64

Le Blay G, Chassard C, Baltzer S, Lacroix C. Set up of a new in vitro model to study dietary fructans fermentation in formula-fed babies. Br J Nutr. 2010 Feb;103(3):403-11

Le Dréan G, Mounier J, Vasseur V, Arzur D, Habrylo O, Barbier G. Quantification of Penicillium camemberti and P. roqueforti mycelium by real-time PCR to assess their growth dynamics during ripening cheese. Int J Food Microbiol. 2010 Mar 31;138(1-2):100-7

Meot-Duros L, Cérantola S, Talarmin H, Le Meur C, Le Floch G, Magné C. New antibacterial and cytotoxic activities of falcarindiol isolated in Crithmum maritimum L. leaf extract. Food Chem Toxicol. 2010 Feb;48(2):553-7

Mounier J, Le Blay G, Vasseur V, Le Floch G, Jany JL, Barbier G. Application of denaturing high-performance liquid chromatography (DHPLC) for yeasts identification in red smear cheese surfaces. Lett Appl Microbiol. 2010 Jul;51(1):18-23

2009

Burgaud G, Le Calvez T, Arzur D, Vandenkoornhuyse P, Barbier G. Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents. Environ Microbiol. 2009 Jun;11(6):1588-600. Epub 2009 Feb 23.

Cleusix V, Lacroix C, Dasen G, Leo M, Le Blay G.Comparative study of a new quantitative real-time PCR targeting the xylulose-5-phosphate/fructose-6-phosphate phosphoketolase bifidobacterial gene (xfp) in faecal samples with two fluorescence in situ hybridization methods.J Appl Microbiol. 2009 May 26. [Epub ahead of print]

Deetae P, Mounier J, Bonnarme P, Spinnler HE, Irlinger F, Helinck S.Effects of Proteus vulgaris growth on the establishment of a cheese microbial community and on the production of volatile aroma compounds in a model cheese. J Appl Microbiol. 2009 Oct;107(4):1404-13. Epub 2009 Apr 24.

Forquin MP, Duvergey H, Proux C, Loux V, Mounier J, Landaud S, Coppée JY, Gibrat JF, Bonnarme P, Martin-Verstraete I, Vallaeys T. Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses. Appl Environ Microbiol. 2009 Oct;75(19):6406-9. Epub 2009 Jul 31.

Irlinger F, Mounier J. Microbial interactions in cheese: implications for cheese quality and safety. Curr Opin Biotechnol. 2009 Apr;20(2):142-8. Epub 2009 Apr 1.

Le Blay G, Chassard C, Baltzer S, Lacroix C. Set up of a new in vitro model to study dietary fructans fermentation in formula-fed babies.
Br J Nutr. 2009 Sep 15:1-9. [Epub ahead of print]

Le Blay G, Rytka J, Zihler A, Lacroix C. New in vitro colonic fermentation model for Salmonella infection in the child gut. FEMS Microbiol Ecol. 2009 Feb;67(2):198-207. Epub 2008 Dec 12.

Le Calvez T, Burgaud G, Mahé S, Barbier G, Vandenkoornhuyse P. Fungal Diversity in Deep Sea Hydrothermal Ecosystems. Appl Environ Microbiol. 2009 Jul 24. [Epub ahead of print]

Lupo C, Bougeard S, Balaine L, Michel V, Petetin I, Colin P, Lebouquin S, Chauvin C. Risk factors for sanitary condemnation in broiler chickens and their relative impact: application of an original multiblock approach. Epidemiol Infect. 2009 Aug 24:1-12. [Epub ahead of print]

Lupo C, Le Bouquin S, Balaine L, Michel V, Peraste J, Petetin I, Colin P, Chauvin C. Feasibility of screening broiler chicken flocks for risk markers as an aid for meat inspection. Epidemiol Infect. 2009 Aug;137(8):1086-98. Epub 2009 Feb 23.

Magnino S, Colin P, Dei-Cas E, Madsen M, McLauchlin J, Nöckler K, Maradona MP, Tsigarida E, Vanopdenbosch E, Van Peteghem C. Biological risks associated with consumption of reptile products. Int J Food Microbiol. 2009 Sep 15;134(3):163-75. Epub 2009 Aug 12.

Mounier J, Monnet C, Jacques N, Antoinette A, Irlinger F. Assessment of the microbial diversity at the surface of Livarot cheese using culture-dependent and independent approaches. Int J Food Microbiol. 2009 Jul 31;133(1-2):31-7. Epub 2009 Apr 24.

Nevarez L, Vasseur V, Le Madec A, Le Bras MA, Coroller L, Leguérinel I, Barbier G. Physiological traits of Penicillium glabrum strain LCP 08.5568, a filamentous fungus isolated from bottled aromatized mineral water. Int J Food Microbiol. 2009 Apr 15;130(3):166-71. Epub 2009 Jan 23.

Vallance J, Le Floch G, Déniel F, Barbier G, Lévesque CA, Rey P. Influence of Pythium oligandrum biocontrol on fungal and oomycete population dynamics in the rhizosphere. Appl Environ Microbiol. 2009 Jul;75(14):4790-800. Epub 2009 May 15.

Zihler A, Le Blay G, de Wouters T, Lacroix C, Braegger CP, Lehner A, Tischler P, Rattei T, Hächler H, Stephan R. In vitro inhibition activity of different bacteriocin-producing Escherichia coli against Salmonella strains isolated from clinical cases. Lett Appl Microbiol. 2009 Jul;49(1):31-8. Epub 2009 Apr 17.

2008

Cleusix V, Lacroix C, Vollenweider S, Le Blay G. Glycerol induces reuterin production and decreases Escherichia coli population in an in vitro model of colonic fermentation with immobilized human feces. FEMS Microbiol Ecol. 2008 Jan;63(1):56-64. Epub 2007 Nov 20.

Goerges S, Mounier J, Rea MC, Gelsomino R, Heise V, Beduhn R, Cogan TM, Vancanneyt M, Scherer S. Commercial ripening starter microorganisms inoculated into cheese milk do not successfully establish themselves in the resident microbial ripening consortia of a South german red smear cheese. Appl Environ Microbiol. 2008 Apr;74(7):2210-7. Epub 2008 Feb 15.

Jany JL, Barbier G. Culture-independent methods for identifying microbial communities in cheese. Food Microbiol. 2008 Oct;25(7):839-48. Epub 2008 Jun 10. Review.

Lupo C, Chauvin C, Balaine L, Petetin I, Péraste J, Colin P, Le Bouquin S. Postmortem condemnations of processed broiler chickens in western France. Vet Rec. 2008 May 31;162(22):709-13.

Meile L, Le Blay G, Thierry A. Safety assessment of dairy microorganisms: Propionibacterium and Bifidobacterium. Int J Food Microbiol. 2008 Sep 1;126(3):316-20. Epub 2007 Aug 22. Review.

Meot-Duros L, Le Floch G, Magné C. Radical scavenging, antioxidant and antimicrobial activities of halophytic species. J Ethnopharmacol. 2008 Mar 5;116(2):258-62. Epub 2007 Nov 22.

Moulin G, Cavalié P, Pellanne I, Chevance A, Laval A, Millemann Y, Colin P, Chauvin C; Antimicrobial Resistance ad hoc Group of the French Food Safety Agency. A comparison of antimicrobial usage in human and veterinary medicine in France from 1999 to 2005. J Antimicrob Chemother. 2008 Sep;62(3):617-25. Epub 2008 May 19.

Mounier J, Monnet C, Vallaeys T, Arditi R, Sarthou AS, Hélias A, Irlinger F. Microbial interactions within a cheese microbial community. Appl Environ Microbiol. 2008 Jan;74(1):172-81. Epub 2007 Nov 2.

Nevarez L, Vasseur V, Le Dréan G, Tanguy A, Guisle-Marsollier I, Houlgatte R, Barbier G. Isolation and analysis of differentially expressed genes in Penicillium glabrum subjected to thermal stress. Microbiology. 2008 Dec;154(Pt 12):3752-65.

2007

Cleusix V, Lacroix C, Vollenweider S, Duboux M, Le Blay G. Inhibitory activity spectrum of reuterin produced by Lactobacillus reuteri against intestinal bacteria. BMC Microbiol. 2007 Nov 12;7:101.

Le Blay G, Lacroix C, Zihler A, Fliss I. In vitro inhibition activity of nisin A, nisin Z, pediocin PA-1 and antibiotics against common intestinal bacteria. Lett Appl Microbiol. 2007 Sep;45(3):252-7.

Le Floch G, Tambong J, Vallance J, Tirilly Y, Lévesque A, Rey P. Rhizosphere persistence of three Pythium oligandrum strains in tomato soilless culture assessed by DNA macroarray and real-time PCR. FEMS Microbiol Ecol. 2007 Aug;61(2):317-26. Epub 2007 Jun 11.

Minnaard J, Delfederico L, Vasseur V, Hollmann A, Rolny I, Semorile L, Pérez PF. Virulence of Bacillus cereus: a multivariate analysis. Int J Food Microbiol. 2007 May 10;116(2):197-206. Epub 2007 Jan 13.

Mounier J, Rea MC, O'Connor PM, Fitzgerald GF, Cogan TM. Growth characteristics of Brevibacterium, Corynebacterium, Microbacterium, and Staphylococcus spp. isolated from surface-ripened cheese. Appl Environ Microbiol. 2007 Dec;73(23):7732-9. Epub 2007 Oct 5.

Rea MC, Görges S, Gelsomino R, Brennan NM, Mounier J, Vancanneyt M, Scherer S, Swings J, Cogan TM. Stability of the biodiversity of the surface consortia of Gubbeen, a red-smear cheese. J Dairy Sci. 2007 May;90(5):2200-10.

Renault D, Déniel F, Benizri E, Sohier D, Barbier G, Rey P. Characterization of Bacillus and Pseudomonas strains with suppressive traits isolated from tomato hydroponic-slow filtration unit. Can J Microbiol. 2007 Jun;53(6):784-97.

2006

Bargain V, Le Quillec S & Déniel F (2006). Des pistes pour optimiser le système. Réussir Fruits et légumes. 2006 ; 248 :44-5.

Dantigny P, Bensoussan M, Vasseur V, Lebrihi A, Buchet C, Ismaili-Alaoui M, Devlieghere F, Roussos S. Standardisation of methods for assessing mould germination: a workshop report. Int J Food Microbiol. 2006 Apr 25;108(2):286-91.

Deniel-F; Renault-D; Tirilly-Y; Barbier-G; Rey-P. A dynamic biofilter to remove pathogens during tomato soilless culture. AGRONOMY-FOR-SUSTAINABLE-DEVELOPMENT. JUL-SEP 2006; 26 (3) : 185-193

Gao J, Pan H, Xiao T, Barbier G, Wang Z, Yue H, Sun S, Nitsche S, Bernadac A, Pradel N, Wu LF. Isolation and characterization of novel marine Roseobacter clade members producing unique intracellular chromium-rich aggregates. Res Microbiol. 2006 Oct;157(8):714-9.

Gnanou Besse N, Audinet N, Barre L, Cauquil A, Cornu M, Colin P. Effect of the inoculum size on Listeria monocytogenes growth in structured media. Int J Food Microbiol. 2006 Jul 1;110(1):43-51
 

Thèses soutenues depuis 2006

Burgaud Gaétan. 7 décembre 2009. Etude des communautés fongiques cultivables des écosystèmes hydrothermaux marins profonds.

Névarez Laurent. 17 juillet 2009. Étude de la croissance et de la réponse au stress de Penicillum glabrum, un champignon filamenteux contaminant de produits alimentaires.

Vallance Jessica. 3 juillet 2009. Lutte biologique par utilisation de l’oomycète Pythium oligandrum : colonisation de la rizosphère et influence sur la dynamique des population microbiennes.

Renaud David. 9 juillet 2007. Caractérisation des écosystèmes microbiens colonisant les biofiltres, les solutions nutritives et les racines de Lycopersicon esculentum en culture hors-sol.