Laboratoire Universitaire de Biodiversité et d'Ecologie Microbienne

Laboratoire Universitaire
de Biodiversité
et d'Ecologie Microbienne

Publications du LUBEM

Publications LUBEM - Axe : Ecosystèmes à composantes fongiques


1. BARONCELLI R, AMBY DB, ZAPPARATA A, SARROCCO S, VANNACCI G, LE FLOCH G, HARRISON RJ, HOLUB E, SUKNO SA, SREENIVASAPRASAD S, THON MR. (2016) Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. BMC Genomics. 17:555.

2. LE LAY C, COTON E, LE BLAY G, CHOBERT JM, HAERTLÉ T, CHOISET Y, VAN LONG NN, MESLET-CLADIÈRE L, MOUNIER J. (2016) Identification and quantification of antifungal compounds produced by lactic acid bacteria and propionibacteria. International Journal of Food Microbiology, 239:79-85.

3. GILLOT G, DECOURCELLE N, DAUER G, BARBIER G, COTON E, DELMAIL D, MOUNIER J. (2016) 1-Octanol, a self-inhibitor of spore germination in Penicillium camemberti. Food Microbiol. 57:1-7

4. FONTAINE K., MOUNIER J., COTON E., HYMERY N. (2016) Individual and combined effects of roquefortine C and mycophenolic acid on human monocytic and intestinal cells. World Mycotoxin Journal, 9 (1) 51-61

5. SMITH MC, MADEC S, COTON E, HYMERY N. (2016) Natural Co-Occurrence of Mycotoxins in Foods and Feeds and Their in vitro Combined Toxicological Effects. Toxins. 8(4):94

6. MORIN-SARDIN S, RIGALMA K, COROLLER L, JANY JL, COTON E. (2016) Effect of temperature, pH, and water activity on Mucor spp. growth on synthetic medium, cheese analog and cheese. Food Microbiology, 56:69-79.

7. MASNEUF-POMAREDE I, SALIN F, BÖRLIN M, COTON E, COTON M, JEUNE CL, LEGRAS JL. (2016) Microsatellite analysis of Saccharomyces uvarum diversity. FEMS Yeast Research, 16(2):fow002.

8. LE LAY C, MOUNIER J, VASSEUR V, WEILL A, LE BLAY G, BARBIER G, COTON E. (2016) In vitro and in situ screening of lactic acid bacteria and propionibacteria antifungal activities against bakery product spoilage molds Food Control, 60, 247-255

9. TULINI F, HYMERY N, HAERTLE T, LE BLAY G, DE MARTINIS E. (2016). Screening for antimicrobial and proteolytic activities of lactic acid bacteria isolated from cow, buffalo and goat milk and cheeses marketed in the southeast region of Brazil. Journal of Dairy Research. 83: 115-124.

10. NGUYEN VAN LONG N., JOLY C., DANTIGNY P. (2016) Active packaging with antifungal activities. International Journal of Food Microbiology 220. 73-90.

11. ASMANI K., PETTON B., LE GRAND J., MOUNIER J., ROBERT R., NICOLAS J.-L. (2016). Establishment of microbiota in larval culture of Pacific oyster, Crassostrea gigas. Aquaculture. 464: 434-444.

12. RAZAFINARIVO J., JANY J.-L., CROUS P.W., LOOTEN R., GAYDOU V., BARBIER G., MOUNIER J., VASSEUR V. (2016.) Cladosporium lebrasiae, a new fungal species isolated from milk bread rolls in France. Fungal Biology, 120: 1017-1029.

13. OFFRET C., DESRIAC F., LE CHEVALIER P., MOUNIER J., JEGOU C., FLEURY Y. (2016). Spotlight on antimicrobial metabolites from the marine bacteria Pseudoalteromonas: Chemodiversity and ecological significance. Marine Drugs, 14: art. no. 129.

14. RÉDOU V, KUMAR A, HAINAUT M, HENRISSAT B, RECORD E, BARBIER G, BURGAUD G. (2016) Draft Genome Sequence of the Deep-Sea Ascomycetous Filamentous Fungus Cadophora malorum Mo12 from the Mid-Atlantic Ridge Reveals Its Biotechnological Potential. Genome Announc. 4(4). pii: e00467-16.

15. RÉDOU V, KUMAR A, HAINAUT M, HENRISSAT B, RECORD E, BARBIER G, BURGAUD G. (2016) Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential. Genome Announc. ;4(4). pii: e00461-16.

16. PACHIADAKI MG, RÉDOU V, BEAUDOIN DJ, BURGAUD G, EDGCOMB VP. (2016) Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy. Front Microbiol. 7:846.

17. BURGAUD G, COTON M, JACQUES N, DEBAETS S, MACIEL NO, ROSA CA, GADANHO M, SAMPAIO JP, CASAREGOLA S. (2016) Yamadazyma barbieri f.a. sp. nov., an ascomycetous anamorphic yeast isolated from a Mid-Atlantic Ridge hydrothermal site (-2300 m) and marine coastal waters. Int J Syst Evol Microbiol. 66(9):3600-3606.

18. COBBAN A, EDGCOMB VP, BURGAUD G, REPETA D, LEADBETTER ER. (2016) Revisiting the pink-red pigmented basidiomycete mirror yeast of the phyllosphere. Microbiologyopen. 5(5):846-855.

19. BOBILLE, H., LIMAMI, A.M., ROBINS, R.J., CUKIER, C., LE FLOCH, G., FUSTEC, J. (2016) Evolution of the amino acid fingerprint in the unsterilized rhizosphere of a legume in relation to plant maturity. Soil Biology and Biochemistry 101, 226-236

20. TALHINHAS, P., BARONCELLI, R., LE FLOCH, G. (2016) Anthracnose of lupins caused by Colletotrichum lupini: A recent disease and a successful worldwide pathogen. Journal of Plant Pathology 98 (1) 5-14

21. DEKOV, V.M., ROUXEL, O., KOUZMANOV, K., BINDI, L., ASAEL, D., FOUQUET, Y., ETOUBLEAU, J., BURGAUD, G., WÄLLE, M. (2016) Enargite-luzonite hydrothermal vents in Manus Back-Arc Basin: Submarine analogues of high-sulfidation epithermal mineralization. Chemical Geology 438 (2) 36-57

22. PANG, K.-L., OVERY, D.P., JONES, E.B.G., CALADO, M.D.L., BURGAUD, G., WALKER, A.K., JOHNSON, J.A. KERR, R.G., CHA, H.-J, BILLS, G.F. (2016) ‘Marine fungi’ and ‘marine-derived fungi’ in natural product chemistry research: Toward a new consensual definition. Fungal Biology Reviews 30 (4) 163-175

23. RAGON, M., NGUYEN THI MINH, H., GUYOT, S., LOISON, P., BURGAUD, G., DUPONT, S., BENEY, L., GERVAIS, P. PERRIER-CORNET, J.-M (2016) Innovative High Gas Pressure Microscopy Chamber Designed for Biological Cell Observation. Microscopy and Microanalysis 22 (1) 63-70

24. PICOT, A., ORTEGA-BELTRAN, A., PUCKETT, R.D., SIEGEL, J.P., MICHAILIDES, T.J. Period of susceptibility of almonds to aflatoxin contamination during development in the orchard. European Journal of Plant Pathology 1-11


1. GILLOT G., JANY J-L., COTON M., LE FLOCH G., DEBAETS S., ROPARS J., LÓPEZ-VILLAVICENCIO M., DUPONT J., BRANCA A., GIRAUD T., COTON E. (2015) Insights into Penicillium roqueforti morphological and genetic diversity. PLOS One (in press) (IF= 3.534)

2. TULINI F., BÍSCOLA V., CHOISET Y., HYMERY N., LE BLAY G., PEREIRA DE MARTINIS E., CHOBERT J-M, HAERTLÉ T. (2015) Evaluation of the proteolytic activity of Enterococcus faecalis FT132 and Lactobacillus paracasei FT700, isolated from dairy products in Brazil, using milk proteins as substrates. European Food Research and Technology (DOI:10.1007/s00217-015-2470-6) (IF=1.387)

3. CAMPBELL-SILLS H., EL KHOURY M., FAVIER M., ROMANO A., BIASIOLI F., SPANO G., SHERMAN D., BOUCHEZ O., COTON E., COTON M., OKADA S., TANAKA N., DOLS-LAFARGUE M., LUCAS P. (2015) Phylogenomic analysis of Oenococcus oeni reveals specific domestication of strains to cider and wines. Genome Biology and Evolution (DOI:10.1093/gbe/evv084) (IF= 4.532)

4. KOSALKOVÁ K., DOMÍNGUEZ-SANTOS R., COTON M., COTON E., GARCÍA-ESTRADA C., LIRAS P., MARTÍN J. F. (2015) A natural short pathway synthesizes roquefortine C but not meleagrin in three different Penicillium roqueforti strains. Applied Microbiology and Biotechnology ( DOI:10.1007/s00253-015-6676-0) (IF= 3.811)

5. FONTAINE K., MOUNIER J., COTON E., HYMERY N. (2015) Individual and combined effects of roquefortine C and mycophenolic acid on human monocytic and intestinal cells. World Mycotoxin Journal (DOI:10.3920/WMJ2014.1861) (IF= 2.38)

6. COROLLER L., COTON E., POSTOLLEC F., SANT'ANA ADE S. (2015). Preface: Spoilers, wonder spores and diehard microorganisms: new insights to integrate these super foes in food spoilage risk management. Food Microbiology, 45(Pt A):1. (IF=3.374)

7. FONTAINE K.., PASSERÓ E., VALLONE L., HYMERY N., COTON M., JANY J-L., MOUNIER J, COTON E. (2015). Occurrence of roquefortine C, mycophenolic acid and aflatoxin M1 mycotoxins in blue-veined cheeses. Food Control, 47:634-640. (IF=2.819)

8. LECELLIER A., GAYDOU V., MOUNIER J., HERMET A., CASTREC L., BARBIER G., ABLAIN W., MANFAIT M., TOUBAS D., SOCKALINGUM G.D. (2015). Implementation of an FTIR spectral library of 486 filamentous fungi strains for rapid identification of molds. Food Microbiology. 45(Pt A):126-134. (IF=3.374)

9. DELAVENNE E., CLIQUET S., TRUNET C., BARBIER G., MOUNIER J., LE BLAY G. (2015). Characterization of the antifungal activity of Lactobacillus harbinensis K.V9.3.1Np and Lactobacillus rhamnosus K.C8.3.1I in yogurt. Food Microbiology. 45(Pt A):10-17. (IF=3.374)

10. GAYDOU V., LECELLIER A., TOUBAS D., MOUNIER J., CASTREC L., BARBIER G., ABLAIN W., MANFAIT M., SOCKALINGUM G.D. (2015). Assessing the discrimination potential of linear and non-linear supervised chemometric methods on a filamentous fungi FTIR spectral database. Analytical Methods, 7:766-778. (IF=1.938)

11. RÉDOU V., NAVARRI M., MESLET-CLADIÈRE L., BARBIER G., BURGAUD G. (2015). Species richness and adaptation of marine fungi from deep-subseafloor sediments. Applied and Environmental Microbiology, 81:3571-3583. (IF=3.952)

12. BURGAIN A, BENSOUSSAN M, DANTIGNY P. (2015) Validation of a predictive model for the growth of chalk yeasts on bread. International Journal of Food Microbiology, 204:47-54. (IF=3.155)

13. TULINI F., HYMERY N., CHOISET Y., CHOBERT J.-M., HAERTLE T., DE MARTINIS E., LE BLAY G. (2015). Milk fermented with the probiotic candidate Lactobacillus paracasei FT700 induces differentiation of monocytes toward macrophages in vitro. Journal of Functional Foods, 15: 533-540. (IF=4.46)

14. GABOYER F., BURGAUD G., ALAIN K. (2015) Physiological and evolutionary potential of microorganisms from the Canterbury Basin subseafloor, a metagenomic approach. FEMS Microbiology Ecology DOI: (IF=3.875)


15. JACQUES N., LOUIS-MONDESIR C., COTON M., COTON E., CASAREGOLA S. (2014) Two novel Saccharomycopsis species isolated from black olive brines in France and tropical plant in French Guiana. Description of Saccharomycopsis olivae f. a., sp. nov., Saccharomycopsis guyanensis f. a., sp. nov., and reassignment of Candida amapae to Saccharomycopsis amapae f. a., comb. nov. International Journal of Systematic and Evolutionnary Microbiology. 64 (6):2169-2175 (IF=2.798)

16. CIOBANU M.-C., BURGAUD G., DUFRESNE A., BREUKER A., RÉDOU V., BEN MAAMAR S., FRÉDÉRIC GABOYER F., VANDENABEELE-TRAMBOUZE O., LIPP J., SCHIPPERS A., VANDENKOORNHUYSE P., BARBIER G., JEBBAR M., GODFROY A., ALAIN K. (2014). Microorganisms persist at record depths in the subseafloor of the Canterbury Basin. The ISME Journal, 8:1370-1380. (IF=9.267)

17. ROPARS J., LOPEZ-VILLAVICENCIO M., DUPONT J., SNIRC A., GILLOT G., COTON M., JANY J.L., COTON E., GIRAUD T. (2014). Induction of sexual reproduction and genetic diversity in the cheese fungus Penicillium roqueforti. Evolutionary Applications, 7:433-441. (IF =4.569)

18. HERMET A., MOUNIER J., KERAVEC M., VASSEUR V., BARBIER G., JANY J.L. (2014) Application of capillary electrophoresis single-stranded conformation polymorphism (CE-SSCP) analysis for identification of fungal communities in cheese. Food Microbiology, 41:82-90. (IF =3.374)

19. HYMERY N., MASSON F., BARBIER G., COTON E. (2014) Cytotoxicity and immunotoxicity of cyclopiazonic on human cells. Toxicology in vitro, 28:940-947. (IF =3.207)

20. LECELLIER, A., MOUNIER, J., GAYDOU, V., CASTREC, L., BARBIER, G., ABLAIN, W., MANFAIT, M., TOUBAS, D., SOCKALINGUM, G.D. (2014) Differentiation and identification of filamentous fungi by high-throughput FTIR spectroscopic analysis of mycelia. International Journal of Food Microbiology, 168-169:32-41. (IF=3.155)

21. BELGUESMIA, Y., RABESONA, H., MOUNIER, J., PAWTOWSKY, A., LE BLAY, G., BARBIER, G., HAERTLÉ, T., CHOBERT, J.-M. (2014) Characterization of antifungal organic acids produced by Lactobacillus harbinensis K.V9.3.1Np immobilized in gellan-xanthan beads during batch fermentation. Food Control, 36:205-211. (IF=2.819)

22. MOHAMMADOU B. A., MBOFUNG C. M., BARBIER G, REY P. (2014). Polyphasic approach to monitor the bacterial population dynamics in fermenting Hibiscus sabdariffa seeds to produce Mbuja. International Journal of Current Microbiology and Applied Sciences, 3:333-346.

23. HYMERY N., VASSEUR V., COTON M., MOUNIER J., JANY J-L., BARBIER G., COTON E. (2014). Filamentous fungi and mycotoxins in cheese: a review. Comprehensive review in food science and food safety, 13:437-456. (IF=3.54)

24. REDOU V., CIOBANU MC., PACHIADAKI MG., EDGCOMB V., ALAIN K., BARBIER G., BURGAUD G. (2014). In-depth analyses of deep subsurface sediments using 454-pyrosequencing reveals a reservoir of buried fungal communities at record-breaking depths. FEMS Microbiology Ecology, 90:908-921. (IF=3.875)

25. MAURICE S., SKREDE I., LEFLOCH G., BARBIER G., KAUSERUD, H. (2014). Population structure of Serpula lacrymans in Europe with an outlook to the French population. Mycologia, 106:889-895. (IF=2.128)

26. GERBORE J., BENHAMOU N., VALLANCE J., LE FLOCH G., GRIZARD, D., REGNAULT-ROGER, C., REY, P. (2014). Biological control of plant pathogens: Advantages and limitations seen through the case study of Pythium oligandrum. Environmental Science and Pollution Research, 21:4847-4860. (IF=2.757)

27. MOHAMMADOU B.-A., LE BLAY G., MBOFUNG C. M., BARBIER G. (2014). Antimicrobial activities, toxinogenic potential and sensitivity to antibiotics of Bacillus strains isolated from Mbuja, an Hibiscus sabdariffa fermented seeds from Cameroon. African Journal of Biotechnology, 13:3617-3627.

28. DANTIGNY P., BURGAIN A., DENIEL F., BENSOUSSAN M. (2014). A model for the effect of pH on the growth of chalk yeasts. International Journal of Food Microbiology, 186:49-54. (IF=3.155)

29. DELAVENNE E., CLIQUET S., MOUNIER J., BARBIER G., LE BLAY G. (2014). Characterization of the antifungal activity of Lactobacillus harbinensis K.V9.3.1Np and Lactobacillus rhamnosus K.C8.3.1I in yogurt. Food Microbiology, 45, 10-17 (IF2013 =3,320)


Publications LUBEM - Axe : Risques sanitaires et d'altérations associés aux bactéries sporulées


1. BELBAHI A, LEGUERINEL I, MÉOT JM, LOISEAU G, MADANI K, BOHUON P. (2016) Modelling the effect of temperature, water activity and carbon dioxide on the growth of Aspergillus niger and Alternaria alternata isolated from fresh date fruit. J Appl Microbiol. 121(6):1685-1698.

2. MTIMET N, GUEGAN S., DURAND L, MATHOT AG, VENAILLE L, LEGUERINEL I, COROLLER L, COUVERT O. (2016) Effect of pH on Thermoanaerobacterium thermosaccharolyticum DSM 571 growth, spore heat resistance and recovery. Food Microbiology, 55:64-72.

3. MTIMET N, TRUNET C, MATHOT AG, VENAILLE L, LEGUERINEL I, COROLLER L, COUVERT O. (2016) Die another day: Fate of heat-treated Geobacillus stearothermophilus ATCC 12980 spores during storage under growth-preventing conditions. Food Microbiology, 56:87-95.

4. GUILLARD V, COUVERT O, STAHL V, HANIN A., DENIS C., HUCHET V, CHAIX E, LORIOT C, VINCELOT T, THUAULT D (2016) Validation of a predictive model coupling gas transfer and microbial growth in fresh food packed under modified atmosphere. Food Microbiology, 58:43-55.

5. ZIANE M, COUVERT O, LE CHEVALIER P, MOUSSA-BBOUDJEMAA B, LEGUERINEL I (2016) Identification and characterization of aerobic spore forming bacteria isolated from commercial camel’s milk in south of Algeria. Small Ruminant Research, 137:59-64.


1. CHAIX E., BROYART B., COUVERT O., GUILLARD V. (2015) Mechanistic model coupling gas exchange dynamics and microbial activity in Modified Atmosphere Packaging of non respiring food. Food Microbiology In press (IF2013 = 3,320)
2. CHAIX E., COUVERT O., GUILLAUME C., GONTARD N., GUILLARD V. (2015). Predictive Microbiology Coupled with Gas (O2/CO2) Transfer in Food/Packaging Systems: How to Develop an Efficient Decision Support Tool for Food Packaging Dimensioning. Comprehensive Reviews in Food Science and Food Safety, 14:1-21 (IF2013= 3.54).
3. COROLLER L., JEUGE S., COUVERT O., CHRISTIEANS S., ELLOUZE M. (2015). Extending the gamma concept to non-thermal inactivation: an innovative model to predict the fate of Salmonella during the dried sausages process. Food Microbiology, 45:266-75. (IF2013 = 3,320)
4. DESRIAC N., COROLLER L., JANNIC F., POSTOLLEC F., SOHIER D. (2015). mRNA biomarkers selection based on Partial Least Square algorithm in order to further predict Bacillus weihenstephanensis acid resistance. Food Microbiology, 45:111-118 (IF2013 = 3,320)
5. MTIMET N., TRUNET C., MATHOT A.-G., VENAILLE L., LEGUERINEL I., COROLLER L., COUVERT O. (2015). Modelling the behavior of Geobacillus stearothermophilus ATCC 12980 throughout its life cycle as vegetative cells or spores using growth boundaries. Food Microbiology, 48:153-162 (IF2013 = 3,320)
6. TRUNET C., MTIMET N., MATHOT A.G., POSTOLLEC F., LEGUERINEL I., SOHIER D., COUVERT O., CARLIN F., COROLLER L. (2015). Modeling the recovery of heat treated Bacillus licheniformis Ad978 and Bacillus weihenstephanensis KBAB4 spores at suboptimal temperature and pH using growth limits. Applied and Environmental Microbiology, 81:562-568 (IF2013= 3.952).


7. ABOYA MOROH, J.-L., FLEURY, Y., TIA, H., BAHI C., LIETARD, C., COROLLER, L., EDOH, V., COULIBALY, A., LABIA, R., LEGUERINEL, I. (2014). Diversity and antibiotic resistance of uropathogenic bacteria from Abidjan. African Journal of Urology 20:18-24 (IF2013= ).
8. DESRIAC F., LE CHEVALIER P., BRILLET B., LEGUERINEL I., THUILLIER B., PAILLARD C., FLEURY Y. (2014). Exploring the hologenome concept in marine bivalvia: haemolymph microbiota as a pertinent source of probiotics for aquaculture. FEMS microbiology letters, 350:107-116 (IF2013= 2.723.)
9. ZIANE M., DESRIAC N., LE CHEVALIER P., COUVERT O., MOUSSA-BOUDJEMAA B., LEGUERINEL I. (2014). Identification, heat resistance and growth potential of mesophilic spore-forming bacteria isolated from Algerian retail packaged couscous. Food Control, 45:16-21 (IF2013= 2.819).



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